{1} Active Tickets (160 matches)

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Ticket Summary Component Version Milestone Type Owner Created
#515 develop a proper way to include freemarker templates on a per virtual journal basis ambra 0.9-SNAPSHOT None defect 07/31/07
#410 REST based interface for Annotations, Users, Journals, Issues. ambra 0.7 None enhancement 06/20/07
#653 trackback spam filter is too conservative ambra 0.8.2-SNAPSHOT enhancement 09/20/07
#421 Upgrade CAS to 3.3.1 ambra-sso 0.7 task 06/22/07
#930 handle site-wide overrides for css, javascript, and image files ambra 0.9-SNAPSHOT 0.9.3_rc2 enhancement 05/06/08
#932 Roll back r5648 after move to JDK 1.6 ambra 0.9-SNAPSHOT defect 05/06/08
#1079 article_content.ftl DOI Resolver Link ambra 0.9.1-SNAPSHOT task 01/02/09
#1080 article_content.ftl docURL Setting ambra 0.9.1-SNAPSHOT task 01/02/09
#1081 Sending abstract to Digg.com in artle_content.ftl ambra 0.9.1-SNAPSHOT task 01/02/09

dragisak

Ticket Summary Component Version Milestone Type Owner Created
#910 Fix and rework user handling ambra 0.9-SNAPSHOT defect dragisak 04/14/08
#345 Move Plos Registration database to Mulgara ambra-sso 0.9.1-SNAPSHOT enhancement dragisak 05/28/07
#675 Admin application needs to handle journals better. ambra 0.8 enhancement dragisak 10/01/07
#724 automate volume/issue collections on ingest ambra task dragisak 12/17/07
#854 Ambra Webapp Integration Tests ambra 0.8.3-SNAPSHOT task dragisak 03/19/08
#972 standardize parameter names for actions ambra 0.9-SNAPSHOT task dragisak 06/19/08
#919 support external template sets ambra 0.9-SNAPSHOT 0.9.3_rc2 enhancement dragisak 04/23/08
#467 Remove Publishing application RDF dependency on Topaz URI RDF namespace. ambra 0.7 None defect dragisak 07/09/07
#407 push email change through to mulgara in emailConfirmationSuccess.action - do not require user to logout and then log back in to propagate change to mulgara ambra-sso 0.7 defect dragisak 06/19/07
#1061 Move generation of xref xml blob outside of Ambra. ambra 0.9.1-SNAPSHOT defect dragisak 12/03/08
#1311 Provide a way to override configuration file for embedded Mulgara topaz-mulgara enhancement dragisak 12/21/09
#1039 Use Composite View Pattern / Tiles in Ambra ambra task dragisak 10/17/08
#440 Rating content model need fixing. ambra 0.7 defect dragisak 07/04/07
#718 Ambra should register a TemplateExceptionHandler to avoid Exception traces as Results in Templates ambra 0.8.2-SNAPSHOT defect dragisak 12/11/07
#1140 Mulgara query returns UnhandledException Error ambra 0.9.1_rc1 defect dragisak 03/10/09
#600 handle multiple abstracts correctly on ingest ambra 0.8 task dragisak 08/22/07
#1088 get rid of PLoSJournals override directory, use default journal instead ambra 0.9.1-SNAPSHOT 0.9.3_rc2 enhancement dragisak 01/28/09
#940 Verify that ambra-theme is up to date and also only maintain copies of what we changed, ambra 0.9-SNAPSHOT 0.9.3_rc2 task dragisak 05/15/08
#492 should configure struts2 http (and https) port properties ambra 0.8 None enhancement dragisak 07/19/07
#512 Publishing Application does not create deceased footnote when <contrib> element has deceased="yes" attribute ambra 0.7 None enhancement dragisak 07/30/07
#741 Struts 2 URLHelper bug ambra defect dragisak 01/02/08
#746 fix lazy loading browse cache without losing related performance gains ambra 0.8.2-SNAPSHOT enhancement dragisak 01/08/08
#939 New tests in OTM needed for Interceptor topaz 0.9-SNAPSHOT task dragisak 05/12/08
#1200 article display messed up in topazproject plos templates ambra 0.9.1_rc1 0.9.3_rc2 clarification dragisak 03/18/09
#124 Write a new alert service ambra 0.8 None defect dragisak 08/11/06
#145 Implement profile access-control tests ambra 0.5-SNAPSHOT defect dragisak 08/26/06
#1077 CrossRef XSL: if no object-id, don't include component ambra 0.9.1-SNAPSHOT defect dragisak 12/31/08
#1306 test ambra 0.9.2 defect dragisak 05/14/09
#1307 Test ambra 0.9.2 defect dragisak 05/21/09
#1310 Change search OQL to make queries faster ambra 0.9.3 defect dragisak 08/12/09
#1042 Tombstone Annotations, Replies and Ratings ambra 0.9-rc1 task dragisak 10/23/08
#1043 Modification of annotations should result in creation of superseded versions. ambra 0.9-rc1 task dragisak 10/23/08
#1302 Filter has not been registered with the session-factory ambra 0.9.2 0.9.3_rc2 defect dragisak 05/06/09
#889 allow admin to set volume and issue of formal correction note ambra 0.8.2.1 0.9.3_rc2 enhancement dragisak 04/02/08
#1025 remove need for freemarker config in defaults.xml ambra 0.9.3_rc2 task dragisak 09/11/08

josowski

Ticket Summary Component Version Milestone Type Owner Created
#783 Correction annotations outside of <body> element. ambra 0.8.2.1 task josowski 02/11/08
#870 annotation in numbered list messes up formatting ambra 0.8.2.1 0.9.3_rc2 defect josowski 03/25/08
#1286 Notes Across Different Sections of Text Should Not Be Allowed ambra 0.9.3 0.9.3_rc2 defect josowski 04/29/09
#1304 UnhandledException(PLoSMedicine)> max(1, startPage - 9) is undefined ambra 0.9.3 0.9.3_rc2 defect josowski 05/11/09
#1158 IE6 - Advanced search form date range calendar position is wrong ambra 0.9.1_rc1 clarification josowski 03/14/09
#641 bad behavior when user tries to annotate in acknowledgement section illegal area ambra 0.8 defect josowski 09/18/07
#859 placing a note directly on a reference link breaks the link ambra 0.8.2.1 defect josowski 03/20/08
#990 Invalid annotation URI supplied to listReplyAction ambra 0.9-rc1 defect josowski 07/17/08
#1019 note range select bug in firefox 3.0 ambra 0.9-rc2-SNAPSHOT defect josowski 08/27/08
#1230 Adding note to URI in figure legend causes incorrect placement ambra 0.9.1_rc1 0.9.3_rc2 clarification josowski 03/25/09
#1078 Formal correction text overlaps with list number ambra 0.9.1-SNAPSHOT defect josowski 12/31/08
#1241 Competing Interest Statement Radio button text ambra enhancement josowski 03/26/09
#1291 Wrong selection error in Authors list and References list ambra 0.9.3 0.9.3_rc2 defect josowski 04/29/09
#785 Migrate Formal Correction Header HTML markup assembly from javascript to viewnlm-v2.xsl ambra 0.8.2.1-SNAPSHOT 0.9.3_rc2 task josowski 02/13/08
#1242 Annotation window positioning after error ambra defect josowski 03/26/09
#987 Annotation display messed up ambra 0.9-rc1 0.9.3_rc2 defect josowski 07/17/08
#1259 Google Scholar link returning incorrect result set ambra 0.9.3 0.9.3_rc2 defect josowski 04/06/09
#1260 Multiple Scopus Citations in Cited By Links ambra 0.9.3 0.9.3_rc2 defect josowski * 04/06/09

npeterson

Ticket Summary Component Version Milestone Type Owner Created
#1197 unable to order volumes withing a journal ambra 0.9.1_rc1 clarification npeterson 03/18/09
#1303 deleting a volume in admin panel orphans the issues ambra 0.9.3 defect npeterson 05/11/09
#1143 prepare-sip creates a bad MANIFEST.xml ambra 0.9.1_rc1 defect npeterson 03/12/09
#1135 ambra hangs when multiple ambras are in use on the same stack ambra 0.9.1_rc1 0.9.3_rc2 clarification npeterson 03/02/09
#1301 removing crosspubbed article doesn't clean up after itself ambra 0.9.3 defect npeterson 05/05/09
#1298 Cannot access install scripts for ambra ambra 0.9.2 0.9.3_rc2 defect npeterson 05/01/09
#1278 change author list format in extended feed ambra 0.9.2 0.9.3_rc2 task npeterson 04/28/09

pag

Ticket Summary Component Version Milestone Type Owner Created
#1056 Must always create definitions for superseded properties (even when not annotated) topaz 0.9.1-SNAPSHOT defect pag 11/21/08
#1060 Filter out rows from OQL result if all columns are null topaz 0.9.1-SNAPSHOT defect pag 11/21/08
#1021 'between' criterion or a generic 'alias' criterion that allows alternate $s and $varPrefix topaz 0.9-rc1 enhancement pag 09/01/08
#1036 Register all store resources at begin of transaction topaz 0.9-rc1 defect pag 10/13/08
#1243 Relative URI's not properly handled topaz-mulgara 0.9.1_rc1 defect pag 03/26/09
#1272 Embedded mulgara shutdown problem topaz-mulgara 0.9.2 defect pag 04/27/09
#698 Need a way to return the language tag associated with an RDF string literal. topaz 0.8.2-SNAPSHOT enhancement pag 10/15/07
#818 Change the Embedded class concept: instead of treating them as values ala Hibernate, treat them as Entities too. topaz 0.8.3-SNAPSHOT enhancement pag 03/04/08
#819 Criteria should allow childCriteria() creation for embedded classes in addition to using '.' as a separator. topaz 0.8.3-SNAPSHOT enhancement pag 03/04/08
#820 Use ontologies to store content model info and have references to them from ClassMetadata etc. topaz 0.8.3-SNAPSHOT enhancement pag 03/04/08
#821 Restrictions as sub-classes topaz 0.8.3-SNAPSHOT enhancement pag 03/04/08
#823 Support tx recovery in OTM for local transactions topaz 0.8.3-SNAPSHOT enhancement pag 03/04/08
#840 Mapper selection needs to be revisited topaz 0.8.2.1 enhancement pag 03/11/08
#883 View Projection var serialization is POJO specific. topaz 0.8.3-SNAPSHOT enhancement pag 04/01/08
#884 @PredicateMap improvements topaz 0.8.3-SNAPSHOT enhancement pag 04/01/08
#885 Definition updates as an undoable set topaz 0.8.2.1 enhancement pag 04/01/08
#1001 AllegroGraph connector? topaz 0.9-rc1 enhancement pag 07/29/08
#1035 Delete Criterias completely as an option in Topaz topaz 0.9-rc1 enhancement pag 10/08/08
#1044 StringCompareResolver should use new "DefaultGraphs" feature in mulgara topaz 0.9-rc1 enhancement pag 10/23/08
#1045 Use default graphs for xsd and prefix graphs topaz 0.9-rc1 enhancement pag 10/23/08
#1049 runitql swallows data types of literals topaz 0.9.1-SNAPSHOT enhancement pag 10/28/08
#1054 Register a default 'Top' level object in Topaz by default. Similar to owl:Thing and Object in Java. topaz 0.9.1-SNAPSHOT enhancement pag 11/18/08
#1055 Move preload() and preloadFromSearch() out of SessionFactory topaz 0.9.1-SNAPSHOT enhancement pag 11/20/08
#1059 Stores must do queries for Session.get() in sub-class graphs also. topaz 0.9.1-SNAPSHOT enhancement pag 11/21/08
#1067 Add Akubra as blob store to Ambra. topaz 0.9.1-SNAPSHOT enhancement pag 12/16/08
#1057 Clean up metadata definitions and mapping topaz 0.9.1-SNAPSHOT task pag 11/21/08
#824 Support tx recovery in OTM for global transactions topaz 0.8.3-SNAPSHOT unassigned pag 03/04/08

pradeep

Ticket Summary Component Version Milestone Type Owner Created
#1018 return a helpful error if user tries to verify their email address twice ambra-sso 0.9-rc1 defect pradeep 08/22/08
#1312 type=PropType.DATA should be implicitly guessed for user-defined serializable literals topaz 0.9.3 defect pradeep 05/20/11
#1064 prepare-sip: better handling of tar.gz packages ambra 0.9.1-SNAPSHOT enhancement pradeep 12/08/08
#974 dummy/login page has incorrect help text ambra-sso 0.8.2.1 task pradeep 06/20/08

rich

Ticket Summary Component Version Milestone Type Owner Created
#66 Wiki page to articles for various interesting applications (RDF Abstract, language translation, etc.) ambra None enhancement rich 06/14/06
#891 genericize article delete - expect the article zip filename to match the doi suffix, rather than removing the string "journal" ambra 0.8.2.1 None enhancement rich 04/03/08
#1216 ONE homepage timeout ambra 0.9.1_rc1 clarification rich 03/22/09
#1184 Updated the anchor codes for Article Blurbs ambra 0.9.1_rc1 enhancement rich 03/18/09
#614 Email address(es) specified for correspondence with article's creators is not being migrated or ingested ambra 0.8 task rich 08/27/07
#996 disallow text selection based article annotations for text adjacent to figures and tables ambra 0.9.3_rc2 clarification rich 07/23/08
#1305 Blog links missing ambra 0.9.3 0.9.3_rc2 clarification rich 05/11/09
#509 footnote links for figures with footnotes don't work (also, footnote links are showing the rid instead of the footnote) ambra 0.7 None defect rich 07/27/07
#539 Journal definition via a XML file. ambra 0.8 None task rich 08/13/07
#1007 article "linkback" URL on listThread.action uses deprecated fetchArticle.action format ambra 0.9-rc2-SNAPSHOT defect rich 08/11/08
#1128 users with + in email address are given invalid verification URLs ambra-sso 0.9.1_rc1 defect rich 02/24/09
#1142 prepare-sip sax error ambra 0.9.1_rc1 defect rich 03/12/09
#1226 r7512 adds links that don't point to a valid destination ambra defect rich 03/24/09
#1227 r7512 adds absolute pathed URLs that don't work in a build ambra defect rich 03/24/09
#1116 Change author e-mail to comply with NLM DTD 2.3 ambra 0.9.1_rc1 enhancement rich 02/13/09
#1051 improve feedCache invalidation ambra 0.9.1-SNAPSHOT task rich 11/06/08
#1020 when editing a user through the admin pages, user cache is not cleared for logged in user ambra 0.9-rc2-SNAPSHOT defect rich 08/29/08
#1221 adminTop annotation links don't respect journal context ambra 0.9.1_rc2-SNAPSHOT defect rich 03/23/09
#1222 editAnnotation action doesn't work in edge case ambra 0.9.1_rc1 defect rich 03/23/09
#618 make article URL human friendly - no escaped characters and as short as possible ambra 0.8 enhancement rich 08/28/07
#1127 freemarker.journal.page.title configuration does not propagate from default journal to other journals ambra 0.9.1_rc2-SNAPSHOT 0.9.3_rc2 defect rich 02/23/09
#159 xmlns(x=foo) is broken in xpointer lib ambra 0.5-SNAPSHOT None defect rich 09/08/06
#182 CAS email lookup service needs to be secured ambra 0.5-SNAPSHOT None defect rich 10/02/06
#225 Support different languages in search ambra 0.5-SNAPSHOT None defect rich 11/27/06
#516 update XSL file to 2.0 ambra 0.8 None enhancement rich 07/31/07
#89 Prevent as far as possible automated registration of users. ambra 0.5-SNAPSHOT None task rich 07/25/06
#1013 cas login page is wide in IE6 ambra-sso 0.9-rc2-SNAPSHOT clarification rich 08/14/08
#985 it is impossible to remove all issues from a volume ambra 0.9-SNAPSHOT defect rich 07/09/08
#1091 feed cache keys are not invalidated correctly on article publish ambra 0.9.1_rc1 defect rich 02/02/09
#1093 transient error viewing annotations ambra 0.9.1_rc1 defect rich 02/02/09
#1238 favicon URL in feed is bad ambra defect rich 03/25/09
#899 extend DOI resolver to handle supplementary-material ambra 0.8.2.1 enhancement rich 04/04/08
#1252 track outgoing links with google analytics ambra enhancement rich 03/30/09
#1253 improve validation in prepare-sip ambra enhancement rich 03/30/09
#1123 genericize prepare-sip ambra 0.9.1_rc1 task rich 02/18/09
#1239 get rid of config.ambra.platform.cisStartDate ambra task rich 03/25/09

ronald

Ticket Summary Component Version Milestone Type Owner Created
#1034 Remove all TQL queries in Ambra ambra 0.9-rc1 defect ronald 10/08/08
#1249 Search on article abstract does not find expected results ambra 0.9.1_rc1 defect ronald 03/30/09

russ

Ticket Summary Component Version Milestone Type Owner Created
#1108 promoted a note to a formal correction and the body was eaten ambra 0.9.1_rc1 0.9.3_rc2 clarification russ 02/10/09
#1132 add ttl and set eternal false for some caches ambra 0.9.1_rc1 0.9.3_rc2 clarification russ 02/26/09

ssterling

Ticket Summary Component Version Milestone Type Owner Created
#420 logging: bad article ID should give 404, not site error ambra 0.7 None enhancement ssterling 06/22/07
#781 findArticle.action constructs invalid pubmed search URLs in some cases ambra 0.8.2 defect ssterling 02/07/08
#871 Admin interface to change a user's password ambra 0.8.2.1 enhancement ssterling 03/25/08
#872 discussion thread: too many RE:'s ambra 0.8.2.1 enhancement ssterling 03/25/08

stoomey

Ticket Summary Component Version Milestone Type Owner Created
#402 Redesign of RA abstract and summary sections ambra 0.8.2-SNAPSHOT enhancement stoomey 06/18/07
#981 'see all ratings' needs paging ambra 0.9-SNAPSHOT enhancement stoomey * 07/08/08

wtoconnor

Ticket Summary Component Version Milestone Type Owner Created
#1269 publishing articles is slow ambra 0.9.2 0.9.3_rc2 defect wtoconnor 04/23/09
#605 return user to origination journal after createNewUser or editProfile ambra 0.8 None enhancement wtoconnor 08/24/07
#690 pull image attribution info from the cover image article and display on TOC page ambra 0.8 enhancement wtoconnor 10/11/07
#1274 serialization errors in 0.9.3 ambra 0.9.3 0.9.3_rc2 defect wtoconnor * 04/28/09
#517 group author name missing from "email this article" template ambra 0.7 None defect wtoconnor 08/01/07
#593 group authors do not show up in feed ambra 0.7 defect wtoconnor 08/22/07
#502 Add references (cited articles etc.) to the article feed data ambra 0.7 enhancement wtoconnor 07/25/07
#858 cache search ambra 0.8.2.1 enhancement wtoconnor 03/20/08
#1213 delete volume without deleting issues ambra 0.9.1_rc1 defect wtoconnor 03/20/09
#567 add 'delete' button to editAnnotation page ambra 0.8 enhancement wtoconnor 08/17/07
#1203 Deletion of an Article does not update Issues list of articles. ambra 0.9.1_rc1 enhancement wtoconnor 03/19/09
#719 dynamic title for browseIssue ambra 0.8.2-SNAPSHOT task wtoconnor * 12/14/07
#1009 add PMC article-type to extended feed ambra 0.9-rc2-SNAPSHOT task wtoconnor 08/12/08
#1015 include issn in extended feed ambra 0.9-rc1 task wtoconnor 08/20/08
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